J5_8ZHC_005
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|2403, 8ZHC|1|LA|A|2816, 8ZHC|1|LA|U|2872, 8ZHC|1|LA|G|2873, 8ZHC|1|LA|U|2874, 8ZHC|1|LA|U|2977, 8ZHC|1|LA|U|2978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|LA|A|2398
8ZHC|1|LA|G|2399
8ZHC|1|LA|A|2400
8ZHC|1|LA|A|2401
8ZHC|1|LA|G|2402
8ZHC|1|LA|A|2403
8ZHC|1|LA|C|2404
8ZHC|1|LA|C|2405
*
8ZHC|1|LA|G|2814
8ZHC|1|LA|G|2815
8ZHC|1|LA|A|2816
8ZHC|1|LA|U|2817
8ZHC|1|LA|A|2818
8ZHC|1|LA|A|2819
8ZHC|1|LA|C|2820
8ZHC|1|LA|U|2821
8ZHC|1|LA|G|2822
*
8ZHC|1|LA|C|2866
8ZHC|1|LA|U|2867
8ZHC|1|LA|U|2868
8ZHC|1|LA|C|2869
8ZHC|1|LA|G|2870
8ZHC|1|LA|A|2871
8ZHC|1|LA|U|2872
8ZHC|1|LA|G|2873
8ZHC|1|LA|U|2874
8ZHC|1|LA|C|2875
*
8ZHC|1|LA|G|2950
8ZHC|1|LA|G|2951
8ZHC|1|LA|U|2952
8ZHC|1|LA|U|2953
8ZHC|1|LA|U|2954
8ZHC|1|LA|A|2955
8ZHC|1|LA|G|2956
*
8ZHC|1|LA|U|2974
8ZHC|1|LA|A|2975
8ZHC|1|LA|G|2976
8ZHC|1|LA|U|2977
8ZHC|1|LA|U|2978
8ZHC|1|LA|U|2979
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain Ta
- Transfer RNA; tRNA
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
- Chain pp
- Peptide 2k
Coloring options: