J5_8ZHC_006

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

8ZHC|1|LA|G|2417, 8ZHC|1|LA|A|2798, 8ZHC|1|LA|G|2799, 8ZHC|1|LA|A|2800, 8ZHC|1|LA|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8ZHC_006 not in the Motif Atlas

Homologous match to J5_8P9A_015

Geometric discrepancy: 0.2351

The information below is about J5_8P9A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_96125.1

Basepair signature

cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8ZHC|1|LA|U|2415
8ZHC|1|LA|U|2416
8ZHC|1|LA|G|2417
8ZHC|1|LA|A|2418
*
8ZHC|1|LA|U|2610
8ZHC|1|LA|U|2611
8ZHC|1|LA|U|2612
8ZHC|1|LA|G|2613
*
8ZHC|1|LA|C|2626
8ZHC|1|LA|A|2627
*
8ZHC|1|LA|U|2649
8ZHC|1|LA|G|2650
*
8ZHC|1|LA|C|2797
8ZHC|1|LA|A|2798
8ZHC|1|LA|G|2799
8ZHC|1|LA|A|2800
8ZHC|1|LA|A|2801
8ZHC|1|LA|A|2802
8ZHC|1|LA|A|2803

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LP

Large ribosomal subunit protein eL15A

Chain LS

Large ribosomal subunit protein eL18A

Chain LV

Large ribosomal subunit protein eL21A

Chain Lc

Large ribosomal subunit protein uL15

Chain Ld

Large ribosomal subunit protein eL29

Chain Lq

Large ribosomal subunit protein eL42A