J5_8ZHC_008
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUUGUCU*AUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 39 nucleotides
- Bulged bases
- 8ZHC|1|S2|U|32, 8ZHC|1|S2|U|33, 8ZHC|1|S2|G|510, 8ZHC|1|S2|G|537, 8ZHC|1|S2|A|541, 8ZHC|1|S2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|S2|C|31
8ZHC|1|S2|U|32
8ZHC|1|S2|U|33
8ZHC|1|S2|G|34
8ZHC|1|S2|U|35
8ZHC|1|S2|C|36
8ZHC|1|S2|U|37
*
8ZHC|1|S2|A|471
8ZHC|1|S2|U|472
8ZHC|1|S2|A|473
8ZHC|1|S2|A|474
8ZHC|1|S2|A|475
8ZHC|1|S2|U|476
8ZHC|1|S2|A|477
8ZHC|1|S2|A|478
8ZHC|1|S2|C|479
*
8ZHC|1|S2|G|509
8ZHC|1|S2|G|510
8ZHC|1|S2|A|511
8ZHC|1|S2|A|512
8ZHC|1|S2|U|513
8ZHC|1|S2|G|514
8ZHC|1|S2|A|515
8ZHC|1|S2|G|516
*
8ZHC|1|S2|C|536
8ZHC|1|S2|G|537
8ZHC|1|S2|A|538
8ZHC|1|S2|G|539
8ZHC|1|S2|G|540
8ZHC|1|S2|A|541
8ZHC|1|S2|A|542
8ZHC|1|S2|C|543
8ZHC|1|S2|A|544
8ZHC|1|S2|A|545
8ZHC|1|S2|U|546
*
8ZHC|1|S2|A|592
8ZHC|1|S2|U|593
8ZHC|1|S2|A|594
8ZHC|1|S2|G|595
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain Sg
- Small ribosomal subunit protein eS30A
Coloring options: