3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
9AX7|1|a|U|1758, 9AX7|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9AX7_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0541
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9AX7|1|a|G|1674
9AX7|1|a|C|1675
9AX7|1|a|A|1676
9AX7|1|a|A|1677
9AX7|1|a|A|1678
9AX7|1|a|A|1679
9AX7|1|a|U|1680
9AX7|1|a|G|1681
9AX7|1|a|G|1682
*
9AX7|1|a|C|1706
9AX7|1|a|G|1707
*
9AX7|1|a|U|1751
9AX7|1|a|C|1752
*
9AX7|1|a|G|1756
9AX7|1|a|A|1757
9AX7|1|a|U|1758
9AX7|1|a|A|1759
9AX7|1|a|C|1760
9AX7|1|a|C|1761
9AX7|1|a|A|1762
9AX7|1|a|G|1763
9AX7|1|a|C|1764
*
9AX7|1|a|G|1988
9AX7|1|a|G|1989
9AX7|1|a|C|1990

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain d
50S ribosomal protein L3
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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