J5_9AXU_001
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9AXU|1|4|U|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9AXU|1|2|A|20
9AXU|1|2|G|21
9AXU|1|2|G|22
*
9AXU|1|4|C|43
9AXU|1|4|G|44
9AXU|1|4|A|45
9AXU|1|4|U|46
9AXU|1|4|G|47
9AXU|1|4|A|48
9AXU|1|4|A|49
9AXU|1|4|G|50
*
9AXU|1|4|U|110
9AXU|1|4|G|111
9AXU|1|4|A|112
9AXU|1|4|A|113
9AXU|1|4|C|114
9AXU|1|4|G|115
*
9AXU|1|4|C|123
9AXU|1|4|G|124
*
9AXU|1|4|C|145
9AXU|1|4|A|146
9AXU|1|4|U|147
Current chains
- Chain 2
- 28S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain Z
- Large ribosomal subunit protein eL15B
- Chain j
- Large ribosomal subunit protein uL23A
- Chain t
- Large ribosomal subunit protein uL29
- Chain v
- Large ribosomal subunit protein eL37B
- Chain x
- Large ribosomal subunit protein eL39
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