J5_9AXU_002
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9AXU|1|2|U|1470
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9AXU|1|2|G|683
9AXU|1|2|G|684
9AXU|1|2|A|685
9AXU|1|2|G|686
9AXU|1|2|U|687
9AXU|1|2|C|688
*
9AXU|1|2|G|831
9AXU|1|2|G|832
9AXU|1|2|A|833
9AXU|1|2|C|834
*
9AXU|1|2|G|973
9AXU|1|2|U|974
9AXU|1|2|U|975
9AXU|1|2|C|976
*
9AXU|1|2|G|1409
9AXU|1|2|C|1410
*
9AXU|1|2|G|1465
9AXU|1|2|C|1466
9AXU|1|2|A|1467
9AXU|1|2|G|1468
9AXU|1|2|A|1469
9AXU|1|2|U|1470
9AXU|1|2|C|1471
Current chains
- Chain 2
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- Large ribosomal subunit protein uL4A
- Chain X
- Large ribosomal subunit protein eL13
- Chain m
- Large ribosomal subunit protein uL15B
- Chain q
- Large ribosomal subunit protein eL32A
- Chain y
- Large ribosomal subunit protein eL28
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