J5_9AXU_004

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GCAAAAUGG*UG*UG*CGGACAAGG*CAC

Length

25 nucleotides

Bulged bases

9AXU|1|2|G|2204, 9AXU|1|2|G|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|G|1961
9AXU|1|2|C|1962
9AXU|1|2|A|1963
9AXU|1|2|A|1964
9AXU|1|2|A|1965
9AXU|1|2|A|1966
9AXU|1|2|U|1967
9AXU|1|2|G|1968
9AXU|1|2|G|1969
*
9AXU|1|2|U|1993
9AXU|1|2|G|1994
*
9AXU|1|2|U|2197
9AXU|1|2|G|2198
*
9AXU|1|2|C|2202
9AXU|1|2|G|2203
9AXU|1|2|G|2204
9AXU|1|2|A|2205
9AXU|1|2|C|2206
9AXU|1|2|A|2207
9AXU|1|2|A|2208
9AXU|1|2|G|2209
9AXU|1|2|G|2210
*
9AXU|1|2|C|2419
9AXU|1|2|A|2420
9AXU|1|2|C|2421

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL3A

Chain d

Large ribosomal subunit protein eL19B

Chain h

Large ribosomal subunit protein uL14B

Chain i

Large ribosomal subunit protein eL24B