J5_9AXU_005

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

9AXU|1|2|A|2492, 9AXU|1|2|A|2912, 9AXU|1|2|U|2968, 9AXU|1|2|G|2969, 9AXU|1|2|U|2970, 9AXU|1|2|U|3050, 9AXU|1|2|U|3073, 9AXU|1|2|U|3074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_14788.2

Basepair signature

cWW-F-tHS-F-F-F-cWW-F-F-cWW-F-cWW-F-F-tHH-cWW-F-tHW-F-F-cWW-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|A|2487
9AXU|1|2|G|2488
9AXU|1|2|A|2489
9AXU|1|2|A|2490
9AXU|1|2|G|2491
9AXU|1|2|A|2492
9AXU|1|2|C|2493
9AXU|1|2|C|2494
*
9AXU|1|2|G|2910
9AXU|1|2|G|2911
9AXU|1|2|A|2912
9AXU|1|2|U|2913
9AXU|1|2|A|2914
9AXU|1|2|A|2915
9AXU|1|2|C|2916
9AXU|1|2|U|2917
9AXU|1|2|G|2918
*
9AXU|1|2|C|2962
9AXU|1|2|U|2963
9AXU|1|2|U|2964
9AXU|1|2|C|2965
9AXU|1|2|G|2966
9AXU|1|2|A|2967
9AXU|1|2|U|2968
9AXU|1|2|G|2969
9AXU|1|2|U|2970
9AXU|1|2|C|2971
*
9AXU|1|2|G|3046
9AXU|1|2|G|3047
9AXU|1|2|U|3048
9AXU|1|2|U|3049
9AXU|1|2|U|3050
9AXU|1|2|A|3051
9AXU|1|2|G|3052
*
9AXU|1|2|U|3070
9AXU|1|2|A|3071
9AXU|1|2|G|3072
9AXU|1|2|U|3073
9AXU|1|2|U|3074
9AXU|1|2|U|3075

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL2C

Chain O

Large ribosomal subunit protein uL3A

Chain P

Large ribosomal subunit protein uL4A

Chain b

Large ribosomal subunit protein uL22A

Chain n

Large ribosomal subunit protein eL29