J5_9AXU_007
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9AXU|1|2|G|2506, 9AXU|1|2|A|2894, 9AXU|1|2|G|2895, 9AXU|1|2|A|2896, 9AXU|1|2|A|2897
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9AXU|1|2|U|2504
9AXU|1|2|U|2505
9AXU|1|2|G|2506
9AXU|1|2|A|2507
*
9AXU|1|2|U|2706
9AXU|1|2|U|2707
9AXU|1|2|U|2708
9AXU|1|2|G|2709
*
9AXU|1|2|C|2722
9AXU|1|2|A|2723
*
9AXU|1|2|U|2745
9AXU|1|2|G|2746
*
9AXU|1|2|C|2893
9AXU|1|2|A|2894
9AXU|1|2|G|2895
9AXU|1|2|A|2896
9AXU|1|2|A|2897
9AXU|1|2|A|2898
9AXU|1|2|A|2899
Current chains
- Chain 2
- 28S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein eL42
- Chain N
- Large ribosomal subunit protein uL2C
- Chain Z
- Large ribosomal subunit protein eL15B
- Chain c
- Large ribosomal subunit protein eL18B
- Chain m
- Large ribosomal subunit protein uL15B
- Chain n
- Large ribosomal subunit protein eL29
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