J5_9AZN_004

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUG*CG*CUU*AGGUAG*UGAAUG

Length

20 nucleotides

Bulged bases

9AZN|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|L5|C|3696
9AZN|1|L5|U|3697
9AZN|1|L5|G|3698
*
9AZN|1|L5|C|3752
9AZN|1|L5|G|3753
*
9AZN|1|L5|C|3771
9AZN|1|L5|U|3772
9AZN|1|L5|U|3773
*
9AZN|1|L5|A|3775
9AZN|1|L5|G|3776
9AZN|1|L5|G|3777
9AZN|1|L5|U|3778
9AZN|1|L5|A|3779
9AZN|1|L5|G|3780
*
9AZN|1|L5|U|3814
9AZN|1|L5|G|3815
9AZN|1|L5|A|3816
9AZN|1|L5|A|3817
9AZN|1|L5|U|3818
9AZN|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S3

Small subunit ribosomal RNA; SSU rRNA