J5_9AZN_005

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

9AZN|1|L5|A|3908, 9AZN|1|L5|A|4394, 9AZN|1|L5|G|4451, 9AZN|1|L5|U|4555, 9AZN|1|L5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|L5|A|3903
9AZN|1|L5|G|3904
9AZN|1|L5|A|3905
9AZN|1|L5|A|3906
9AZN|1|L5|G|3907
9AZN|1|L5|A|3908
9AZN|1|L5|C|3909
9AZN|1|L5|C|3910
*
9AZN|1|L5|G|4392
9AZN|1|L5|G|4393
9AZN|1|L5|A|4394
9AZN|1|L5|U|4395
9AZN|1|L5|A|4396
9AZN|1|L5|A|4397
9AZN|1|L5|C|4398
9AZN|1|L5|U|4399
9AZN|1|L5|G|4400
*
9AZN|1|L5|C|4444
9AZN|1|L5|U|4445
9AZN|1|L5|U|4446
9AZN|1|L5|C|4447
9AZN|1|L5|G|4448
9AZN|1|L5|A|4449
9AZN|1|L5|U|4450
9AZN|1|L5|G|4451
9AZN|1|L5|U|4452
9AZN|1|L5|C|4453
*
9AZN|1|L5|G|4528
9AZN|1|L5|G|4529
9AZN|1|L5|U|4530
9AZN|1|L5|U|4531
9AZN|1|L5|U|4532
9AZN|1|L5|A|4533
9AZN|1|L5|G|4534
*
9AZN|1|L5|U|4552
9AZN|1|L5|A|4553
9AZN|1|L5|G|4554
9AZN|1|L5|U|4555
9AZN|1|L5|U|4556
9AZN|1|L5|U|4557

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

Large ribosomal subunit protein uL3

Chain LC

60S ribosomal protein L4

Chain Lb

60S ribosomal protein L29