J5_9AZN_008

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

9AZN|1|S3|G|126, 9AZN|1|S3|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|S3|C|125
9AZN|1|S3|G|126
9AZN|1|S3|C|127
9AZN|1|S3|U|128
9AZN|1|S3|C|129
*
9AZN|1|S3|G|183
9AZN|1|S3|G|184
9AZN|1|S3|G|185
*
9AZN|1|S3|U|214
9AZN|1|S3|G|215
*
9AZN|1|S3|C|310
9AZN|1|S3|C|311
9AZN|1|S3|G|312
*
9AZN|1|S3|C|337
9AZN|1|S3|G|338

Current chains

Chain S3

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6