J5_9B00_001

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

9B00|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9B00_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0534

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9B00|1|1A|C|47
9B00|1|1A|G|48
9B00|1|1A|A|49
9B00|1|1A|U|50
9B00|1|1A|G|51
9B00|1|1A|A|52
9B00|1|1A|A|53
9B00|1|1A|G|54
*
9B00|1|1A|C|116
9B00|1|1A|G|117
9B00|1|1A|A|118
9B00|1|1A|A|119
9B00|1|1A|U|120
9B00|1|1A|G|121
*
9B00|1|1A|C|130
9B00|1|1A|G|131
*
9B00|1|1A|C|148
9B00|1|1A|A|149
9B00|1|1A|C|150
*
9B00|1|1A|G|176
9B00|1|1A|G|177
9B00|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23