J5_9B0S_013

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CUU*AGGUAG*UGAAUG

Length

20 nucleotides

Bulged bases

9B0S|1|l5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|l5|C|3696
9B0S|1|l5|U|3697
9B0S|1|l5|G|3698
*
9B0S|1|l5|C|3752
9B0S|1|l5|G|3753
*
9B0S|1|l5|C|3771
9B0S|1|l5|U|3772
9B0S|1|l5|U|3773
*
9B0S|1|l5|A|3775
9B0S|1|l5|G|3776
9B0S|1|l5|G|3777
9B0S|1|l5|U|3778
9B0S|1|l5|A|3779
9B0S|1|l5|G|3780
*
9B0S|1|l5|U|3814
9B0S|1|l5|G|3815
9B0S|1|l5|A|3816
9B0S|1|l5|A|3817
9B0S|1|l5|U|3818
9B0S|1|l5|G|3819

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lA

60S ribosomal protein L8

Chain ln

60S ribosomal protein L41

Chain s2

Small subunit ribosomal RNA; SSU rRNA