3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUGA*UUUG*CA*UG*CAGAAAA
Length
19 nucleotides
Bulged bases
9B0S|1|l5|G|3922, 9B0S|1|l5|A|4376, 9B0S|1|l5|G|4377, 9B0S|1|l5|A|4378, 9B0S|1|l5|A|4379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9B0S_015 not in the Motif Atlas
Homologous match to J5_8P9A_015
Geometric discrepancy: 0.2886
The information below is about J5_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_96125.1
Basepair signature
cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
6

Unit IDs

9B0S|1|l5|U|3920
9B0S|1|l5|U|3921
9B0S|1|l5|G|3922
9B0S|1|l5|A|3923
*
9B0S|1|l5|U|4188
9B0S|1|l5|U|4189
9B0S|1|l5|U|4190
9B0S|1|l5|G|4191
*
9B0S|1|l5|C|4204
9B0S|1|l5|A|4205
*
9B0S|1|l5|U|4227
9B0S|1|l5|G|4228
*
9B0S|1|l5|C|4375
9B0S|1|l5|A|4376
9B0S|1|l5|G|4377
9B0S|1|l5|A|4378
9B0S|1|l5|A|4379
9B0S|1|l5|A|4380
9B0S|1|l5|A|4381

Current chains

Chain l5
28S rRNA [Homo sapiens]

Nearby chains

Chain lA
60S ribosomal protein L8
Chain lN
60S ribosomal protein L15
Chain lQ
60S ribosomal protein L18
Chain lT
60S ribosomal protein L21
Chain la
60S ribosomal protein L27a
Chain lb
Large ribosomal subunit protein eL29
Chain lo
60S ribosomal protein L36a
Chain pE
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.456 s