J5_9B0S_015
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9B0S|1|l5|G|3922, 9B0S|1|l5|A|4376, 9B0S|1|l5|G|4377, 9B0S|1|l5|A|4378, 9B0S|1|l5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9B0S_015 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2886
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9B0S|1|l5|U|3920
9B0S|1|l5|U|3921
9B0S|1|l5|G|3922
9B0S|1|l5|A|3923
*
9B0S|1|l5|U|4188
9B0S|1|l5|U|4189
9B0S|1|l5|U|4190
9B0S|1|l5|G|4191
*
9B0S|1|l5|C|4204
9B0S|1|l5|A|4205
*
9B0S|1|l5|U|4227
9B0S|1|l5|G|4228
*
9B0S|1|l5|C|4375
9B0S|1|l5|A|4376
9B0S|1|l5|G|4377
9B0S|1|l5|A|4378
9B0S|1|l5|A|4379
9B0S|1|l5|A|4380
9B0S|1|l5|A|4381
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lA
- 60S ribosomal protein L8
- Chain lN
- 60S ribosomal protein L15
- Chain lQ
- 60S ribosomal protein L18
- Chain lT
- 60S ribosomal protein L21
- Chain la
- 60S ribosomal protein L27a
- Chain lb
- Large ribosomal subunit protein eL29
- Chain lo
- 60S ribosomal protein L36a
- Chain pE
- Transfer RNA; tRNA
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