3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GCC*GCAGAUC
Length
24 nucleotides
Bulged bases
9B11|1|L5|C|2289, 9B11|1|L5|U|2350
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9B11_002 not in the Motif Atlas
Homologous match to J5_8CRE_002
Geometric discrepancy: 0.0558
The information below is about J5_8CRE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_63811.1
Basepair signature
cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

9B11|1|L5|G|1335
9B11|1|L5|G|1336
9B11|1|L5|A|1337
9B11|1|L5|G|1338
9B11|1|L5|U|1339
9B11|1|L5|C|1340
*
9B11|1|L5|G|1516
9B11|1|L5|G|1517
9B11|1|L5|A|1518
9B11|1|L5|C|1519
*
9B11|1|L5|G|1658
9B11|1|L5|U|1659
9B11|1|L5|U|1660
9B11|1|L5|C|1661
*
9B11|1|L5|G|2288
9B11|1|L5|C|2289
9B11|1|L5|C|2290
*
9B11|1|L5|G|2345
9B11|1|L5|C|2346
9B11|1|L5|A|2347
9B11|1|L5|G|2348
9B11|1|L5|A|2349
9B11|1|L5|U|2350
9B11|1|L5|C|2351

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
60S ribosomal protein L4
Chain LL
Large ribosomal subunit protein eL13
Chain LN
60S ribosomal protein L15
Chain La
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L32
Chain Lr
60S ribosomal protein L28

Coloring options:


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