3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GCAAGCCGG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
9B11|1|L5|G|3620, 9B11|1|L5|G|3625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9B11_003 not in the Motif Atlas
Homologous match to J5_8CRE_004
Geometric discrepancy: 0.0873
The information below is about J5_8CRE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9B11|1|L5|G|2855
9B11|1|L5|C|2856
9B11|1|L5|A|2857
9B11|1|L5|A|2858
9B11|1|L5|G|2859
9B11|1|L5|C|2860
9B11|1|L5|C|2861
9B11|1|L5|G|2862
9B11|1|L5|G|2863
*
9B11|1|L5|U|2887
9B11|1|L5|G|2888
*
9B11|1|L5|U|3613
9B11|1|L5|G|3614
*
9B11|1|L5|C|3618
9B11|1|L5|G|3619
9B11|1|L5|G|3620
9B11|1|L5|A|3621
9B11|1|L5|C|3622
9B11|1|L5|C|3623
9B11|1|L5|A|3624
9B11|1|L5|G|3625
9B11|1|L5|G|3626
*
9B11|1|L5|C|3835
9B11|1|L5|A|3836
9B11|1|L5|C|3837

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LR
60S ribosomal protein L19
Chain LV
60S ribosomal protein L23
Chain LW
60S ribosomal protein L24
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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