Loop J5_9B11

3D structure

PDB id: 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description: In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 9B11|1|L5|A|3908, 9B11|1|L5|A|4394, 9B11|1|L5|U|4450, 9B11|1|L5|G|4451, 9B11|1|L5|U|4555, 9B11|1|L5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9B11|1|L5|A|3902
9B11|1|L5|A|3903
9B11|1|L5|G|3904
9B11|1|L5|A|3905
9B11|1|L5|A|3906
9B11|1|L5|G|3907
9B11|1|L5|A|3908
9B11|1|L5|C|3909
9B11|1|L5|C|3910
*
9B11|1|L5|G|4392
9B11|1|L5|G|4393
9B11|1|L5|A|4394
9B11|1|L5|U|4395
9B11|1|L5|A|4396
9B11|1|L5|A|4397
9B11|1|L5|C|4398
9B11|1|L5|U|4399
9B11|1|L5|G|4400
*
9B11|1|L5|C|4444
9B11|1|L5|U|4445
9B11|1|L5|U|4446
9B11|1|L5|C|4447
9B11|1|L5|G|4448
9B11|1|L5|A|4449
9B11|1|L5|U|4450
9B11|1|L5|G|4451
9B11|1|L5|U|4452
9B11|1|L5|C|4453
*
9B11|1|L5|G|4528
9B11|1|L5|G|4529
9B11|1|L5|U|4530
9B11|1|L5|U|4531
9B11|1|L5|U|4532
9B11|1|L5|A|4533
9B11|1|L5|G|4534
*
9B11|1|L5|U|4552
9B11|1|L5|A|4553
9B11|1|L5|G|4554
9B11|1|L5|U|4555
9B11|1|L5|U|4556
9B11|1|L5|U|4557
9B11|1|L5|U|4558

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: Large ribosomal subunit protein uL3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_9B11_004