J5_9B24_006

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

9B24|1|Y|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9B24_006 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.122

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9B24|1|Y|C|44
9B24|1|Y|G|45
9B24|1|Y|A|46
9B24|1|Y|U|47
9B24|1|Y|G|48
9B24|1|Y|A|49
9B24|1|Y|A|50
9B24|1|Y|G|51
*
9B24|1|Y|C|113
9B24|1|Y|G|114
9B24|1|Y|A|115
9B24|1|Y|A|116
9B24|1|Y|U|117
9B24|1|Y|G|118
*
9B24|1|Y|C|127
9B24|1|Y|G|128
*
9B24|1|Y|C|147
9B24|1|Y|A|148
9B24|1|Y|C|149
*
9B24|1|Y|G|175
9B24|1|Y|G|176
9B24|1|Y|G|177

Current chains

Chain Y

23S rRNA

Nearby chains

Chain z

Large ribosomal subunit protein bL34