J5_9B24_008
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CGAGUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9B24|1|Y|U|1370
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9B24_008 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1761
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9B24|1|Y|C|676
9B24|1|Y|G|677
9B24|1|Y|A|678
9B24|1|Y|G|679
9B24|1|Y|U|680
9B24|1|Y|C|681
*
9B24|1|Y|G|783
9B24|1|Y|G|784
9B24|1|Y|A|785
9B24|1|Y|C|786
*
9B24|1|Y|G|924
9B24|1|Y|U|925
9B24|1|Y|U|926
9B24|1|Y|C|927
*
9B24|1|Y|G|1310
9B24|1|Y|C|1311
*
9B24|1|Y|G|1365
9B24|1|Y|A|1366
9B24|1|Y|G|1367
9B24|1|Y|A|1368
9B24|1|Y|A|1369
9B24|1|Y|U|1370
9B24|1|Y|G|1371
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL35
- Chain b
- Large ribosomal subunit protein uL4
- Chain h
- Large ribosomal subunit protein uL15
- Chain m
- Large ribosomal subunit protein bL20
- Chain n
- Large ribosomal subunit protein bL21
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