J5_9B24_011
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GGAACUCGGCAAAAUGC*GA*UG*CAAACCAGU*AACUGUC
- Length
- 37 nucleotides
- Bulged bases
- 9B24|1|Y|A|1975, 9B24|1|Y|G|1980, 9B24|1|Y|G|2216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B24|1|Y|G|1884
9B24|1|Y|G|1885
9B24|1|Y|A|1886
9B24|1|Y|A|1887
9B24|1|Y|C|1888
9B24|1|Y|U|1889
9B24|1|Y|C|1890
9B24|1|Y|G|1891
9B24|1|Y|G|1892
9B24|1|Y|C|1893
9B24|1|Y|A|1894
9B24|1|Y|A|1895
9B24|1|Y|A|1896
9B24|1|Y|A|1897
9B24|1|Y|U|1898
9B24|1|Y|G|1899
9B24|1|Y|C|1900
*
9B24|1|Y|G|1924
9B24|1|Y|A|1925
*
9B24|1|Y|U|1968
9B24|1|Y|G|1969
*
9B24|1|Y|C|1973
9B24|1|Y|A|1974
9B24|1|Y|A|1975
9B24|1|Y|A|1976
9B24|1|Y|C|1977
9B24|1|Y|C|1978
9B24|1|Y|A|1979
9B24|1|Y|G|1980
9B24|1|Y|U|1981
*
9B24|1|Y|A|2212
9B24|1|Y|A|2213
9B24|1|Y|C|2214
9B24|1|Y|U|2215
9B24|1|Y|G|2216
9B24|1|Y|U|2217
9B24|1|Y|C|2218
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- Large ribosomal subunit protein uL3
- Chain g
- Large ribosomal subunit protein uL14
- Chain l
- Large ribosomal subunit protein bL19
Coloring options: