J5_9B50_002

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAGCAC*GUGCAAG

Length

34 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B50|1|AA|C|36
9B50|1|AA|U|37
9B50|1|AA|G|38
9B50|1|AA|G|39
*
9B50|1|AA|C|403
9B50|1|AA|G|404
9B50|1|AA|U|405
9B50|1|AA|G|406
*
9B50|1|AA|C|436
9B50|1|AA|U|437
9B50|1|AA|U|438
9B50|1|AA|U|439
9B50|1|AA|C|440
9B50|1|AA|A|441
9B50|1|AA|G|442
*
9B50|1|AA|C|492
9B50|1|AA|A|493
9B50|1|AA|G|494
9B50|1|AA|A|495
9B50|1|AA|A|496
9B50|1|AA|G|497
9B50|1|AA|A|498
9B50|1|AA|A|499
9B50|1|AA|G|500
9B50|1|AA|C|501
9B50|1|AA|A|502
9B50|1|AA|C|503
*
9B50|1|AA|G|542
9B50|1|AA|U|543
9B50|1|AA|G|544
9B50|1|AA|C|545
9B50|1|AA|A|546
9B50|1|AA|A|547
9B50|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12