J5_9B50_003

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9B50|1|AA|A|109, 9B50|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B50|1|AA|C|58
9B50|1|AA|A|59
9B50|1|AA|A|60
9B50|1|AA|G|61
*
9B50|1|AA|C|106
9B50|1|AA|G|107
9B50|1|AA|G|108
9B50|1|AA|A|109
9B50|1|AA|C|110
9B50|1|AA|G|111
9B50|1|AA|G|112
9B50|1|AA|G|113
*
9B50|1|AA|C|314
9B50|1|AA|A|315
9B50|1|AA|C|316
*
9B50|1|AA|G|337
9B50|1|AA|A|338
9B50|1|AA|C|339
*
9B50|1|AA|G|350
9B50|1|AA|G|351
9B50|1|AA|C|352
9B50|1|AA|A|353
9B50|1|AA|G|354

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain BK

50S ribosomal protein L14