J5_9B50_007
3D structure
- PDB id
- 9B50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9B50|1|BA|U|1758, 9B50|1|BA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9B50_007 not in the Motif Atlas
- Homologous match to J5_8B0X_007
- Geometric discrepancy: 0.0414
- The information below is about J5_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9B50|1|BA|G|1674
9B50|1|BA|C|1675
9B50|1|BA|A|1676
9B50|1|BA|A|1677
9B50|1|BA|A|1678
9B50|1|BA|A|1679
9B50|1|BA|U|1680
9B50|1|BA|G|1681
9B50|1|BA|G|1682
*
9B50|1|BA|C|1706
9B50|1|BA|G|1707
*
9B50|1|BA|U|1751
9B50|1|BA|C|1752
*
9B50|1|BA|G|1756
9B50|1|BA|A|1757
9B50|1|BA|U|1758
9B50|1|BA|A|1759
9B50|1|BA|C|1760
9B50|1|BA|C|1761
9B50|1|BA|A|1762
9B50|1|BA|G|1763
9B50|1|BA|C|1764
*
9B50|1|BA|G|1988
9B50|1|BA|G|1989
9B50|1|BA|C|1990
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- 50S ribosomal protein L3
- Chain BK
- 50S ribosomal protein L14
- Chain BP
- 50S ribosomal protein L19
Coloring options: