J5_9B50_008

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

9B50|1|BA|A|2062, 9B50|1|BA|A|2448, 9B50|1|BA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B50|1|BA|G|2057
9B50|1|BA|A|2058
9B50|1|BA|A|2059
9B50|1|BA|A|2060
9B50|1|BA|G|2061
9B50|1|BA|A|2062
9B50|1|BA|C|2063
9B50|1|BA|C|2064
*
9B50|1|BA|G|2446
9B50|1|BA|G|2447
9B50|1|BA|A|2448
9B50|1|BA|U|2449
9B50|1|BA|A|2450
9B50|1|BA|A|2451
9B50|1|BA|C|2452
9B50|1|BA|A|2453
*
9B50|1|BA|U|2500
9B50|1|BA|C|2501
9B50|1|BA|G|2502
9B50|1|BA|A|2503
9B50|1|BA|U|2504
9B50|1|BA|G|2505
9B50|1|BA|U|2506
9B50|1|BA|C|2507
*
9B50|1|BA|G|2582
9B50|1|BA|G|2583
9B50|1|BA|U|2584
9B50|1|BA|U|2585
9B50|1|BA|U|2586
9B50|1|BA|A|2587
9B50|1|BA|G|2588
*
9B50|1|BA|C|2606
9B50|1|BA|G|2607
9B50|1|BA|G|2608
9B50|1|BA|U|2609
9B50|1|BA|C|2610
9B50|1|BA|C|2611

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BC

50S ribosomal protein L2

Chain BD

50S ribosomal protein L3

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BM

50S ribosomal protein L16

Chain BS

50S ribosomal protein L22