J5_9BDL_003
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9BDL|1|A18S|U|55, 9BDL|1|A18S|A|92, 9BDL|1|A18S|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BDL_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.058
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BDL|1|A18S|C|53
9BDL|1|A18S|A|54
9BDL|1|A18S|U|55
9BDL|1|A18S|G|56
*
9BDL|1|A18S|C|89
9BDL|1|A18S|G|90
9BDL|1|A18S|A|91
9BDL|1|A18S|A|92
9BDL|1|A18S|U|93
9BDL|1|A18S|G|94
9BDL|1|A18S|G|95
9BDL|1|A18S|C|96
*
9BDL|1|A18S|G|434
9BDL|1|A18S|A|435
9BDL|1|A18S|G|436
*
9BDL|1|A18S|C|457
9BDL|1|A18S|A|458
9BDL|1|A18S|C|459
*
9BDL|1|A18S|G|470
9BDL|1|A18S|G|471
9BDL|1|A18S|C|472
9BDL|1|A18S|A|473
9BDL|1|A18S|G|474
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AL23
- 60S ribosomal protein L23
- Chain AS04
- 40S ribosomal protein S4
- Chain AS06
- 40S ribosomal protein S6
- Chain AS08
- 40S ribosomal protein S8
- Chain AS09
- 40S ribosomal protein S9
- Chain AS24
- 40S ribosomal protein S24
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