J5_9BDN_004
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9BDN|1|A58S|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BDN_004 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0986
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A28S|G|19
9BDN|1|A28S|U|20
9BDN|1|A28S|G|21
*
9BDN|1|A58S|C|35
9BDN|1|A58S|G|36
9BDN|1|A58S|A|37
9BDN|1|A58S|U|38
9BDN|1|A58S|G|39
9BDN|1|A58S|A|40
9BDN|1|A58S|A|41
9BDN|1|A58S|G|42
*
9BDN|1|A58S|C|101
9BDN|1|A58S|G|102
9BDN|1|A58S|A|103
9BDN|1|A58S|A|104
9BDN|1|A58S|C|105
9BDN|1|A58S|G|106
*
9BDN|1|A58S|C|113
9BDN|1|A58S|G|114
*
9BDN|1|A58S|U|136
9BDN|1|A58S|A|137
9BDN|1|A58S|C|138
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL15
- 60S ribosomal protein L15
- Chain AL25
- Large ribosomal subunit protein uL23
- Chain AL35
- 60S ribosomal protein L35
- Chain AL37
- 60S ribosomal protein L37
- Chain AL39
- 60S ribosomal protein L39
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