J5_9BH5_001
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CA*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9BH5|1|A8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BH5_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0979
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.2
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9BH5|1|A5|G|19
9BH5|1|A5|U|20
9BH5|1|A5|G|21
*
9BH5|1|A8|C|35
9BH5|1|A8|G|36
9BH5|1|A8|A|37
9BH5|1|A8|U|38
9BH5|1|A8|G|39
9BH5|1|A8|A|40
9BH5|1|A8|A|41
9BH5|1|A8|G|42
*
9BH5|1|A8|C|100
9BH5|1|A8|G|101
9BH5|1|A8|A|102
9BH5|1|A8|A|103
9BH5|1|A8|C|104
9BH5|1|A8|G|105
*
9BH5|1|A8|C|111
9BH5|1|A8|A|112
*
9BH5|1|A8|U|133
9BH5|1|A8|A|134
9BH5|1|A8|C|135
Current chains
- Chain A5
- 28S rRNA
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CX
- Large ribosomal subunit protein uL23B
- Chain Ch
- Large ribosomal subunit protein uL29
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
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