J5_9BH5_002
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGAGUG*CGAC*GUUC*GUC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 9BH5|1|A5|U|1440, 9BH5|1|A5|U|1501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BH5_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0761
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.2
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|A5|G|687
9BH5|1|A5|G|688
9BH5|1|A5|A|689
9BH5|1|A5|G|690
9BH5|1|A5|U|691
9BH5|1|A5|G|692
*
9BH5|1|A5|C|854
9BH5|1|A5|G|855
9BH5|1|A5|A|856
9BH5|1|A5|C|857
*
9BH5|1|A5|G|996
9BH5|1|A5|U|997
9BH5|1|A5|U|998
9BH5|1|A5|C|999
*
9BH5|1|A5|G|1439
9BH5|1|A5|U|1440
9BH5|1|A5|C|1441
*
9BH5|1|A5|G|1496
9BH5|1|A5|C|1497
9BH5|1|A5|A|1498
9BH5|1|A5|G|1499
9BH5|1|A5|A|1500
9BH5|1|A5|U|1501
9BH5|1|A5|C|1502
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Ce
- Large ribosomal subunit protein eL32
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