J5_9BH5_004
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9BH5|1|A5|A|2507, 9BH5|1|A5|A|2929, 9BH5|1|A5|U|2985, 9BH5|1|A5|G|2986, 9BH5|1|A5|U|3090, 9BH5|1|A5|U|3091
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|A|2502
9BH5|1|A5|G|2503
9BH5|1|A5|A|2504
9BH5|1|A5|A|2505
9BH5|1|A5|G|2506
9BH5|1|A5|A|2507
9BH5|1|A5|C|2508
9BH5|1|A5|C|2509
*
9BH5|1|A5|G|2927
9BH5|1|A5|G|2928
9BH5|1|A5|A|2929
9BH5|1|A5|U|2930
9BH5|1|A5|A|2931
9BH5|1|A5|A|2932
9BH5|1|A5|C|2933
9BH5|1|A5|U|2934
9BH5|1|A5|G|2935
*
9BH5|1|A5|C|2979
9BH5|1|A5|U|2980
9BH5|1|A5|U|2981
9BH5|1|A5|C|2982
9BH5|1|A5|G|2983
9BH5|1|A5|A|2984
9BH5|1|A5|U|2985
9BH5|1|A5|G|2986
9BH5|1|A5|U|2987
9BH5|1|A5|C|2988
*
9BH5|1|A5|G|3063
9BH5|1|A5|G|3064
9BH5|1|A5|U|3065
9BH5|1|A5|U|3066
9BH5|1|A5|U|3067
9BH5|1|A5|A|3068
9BH5|1|A5|G|3069
*
9BH5|1|A5|U|3087
9BH5|1|A5|A|3088
9BH5|1|A5|G|3089
9BH5|1|A5|U|3090
9BH5|1|A5|U|3091
9BH5|1|A5|U|3092
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CB
- Large ribosomal subunit protein uL3
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CI
- Large ribosomal subunit protein uL16
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Cb
- 60S ribosomal protein L29
- Chain DA
- Transfer RNA; tRNA
- Chain DB
- Transfer RNA; tRNA
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