J5_9BH5_005
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9BH5|1|A5|G|2521, 9BH5|1|A5|A|2911, 9BH5|1|A5|G|2912, 9BH5|1|A5|A|2913, 9BH5|1|A5|A|2914
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BH5_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3039
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|U|2519
9BH5|1|A5|U|2520
9BH5|1|A5|G|2521
9BH5|1|A5|A|2522
*
9BH5|1|A5|U|2723
9BH5|1|A5|U|2724
9BH5|1|A5|U|2725
9BH5|1|A5|G|2726
*
9BH5|1|A5|C|2739
9BH5|1|A5|A|2740
*
9BH5|1|A5|U|2762
9BH5|1|A5|G|2763
*
9BH5|1|A5|C|2910
9BH5|1|A5|A|2911
9BH5|1|A5|G|2912
9BH5|1|A5|A|2913
9BH5|1|A5|A|2914
9BH5|1|A5|A|2915
9BH5|1|A5|A|2916
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CQ
- Large ribosomal subunit protein eL18
- Chain CT
- Large ribosomal subunit protein eL21
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Cb
- 60S ribosomal protein L29
- Chain Co
- Large ribosomal subunit protein eL42
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