J5_9BKD_003
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9BKD|1|A|A|92, 9BKD|1|A|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BKD_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0621
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|C|53
9BKD|1|A|A|54
9BKD|1|A|U|55
9BKD|1|A|G|56
*
9BKD|1|A|C|89
9BKD|1|A|G|90
9BKD|1|A|A|91
9BKD|1|A|A|92
9BKD|1|A|U|93
9BKD|1|A|G|94
9BKD|1|A|G|95
9BKD|1|A|C|96
*
9BKD|1|A|G|434
9BKD|1|A|A|435
9BKD|1|A|G|436
*
9BKD|1|A|C|457
9BKD|1|A|A|458
9BKD|1|A|C|459
*
9BKD|1|A|G|470
9BKD|1|A|G|471
9BKD|1|A|C|472
9BKD|1|A|A|473
9BKD|1|A|G|474
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein eS4, X isoform
- Chain D
- Small ribosomal subunit protein uS4
- Chain R
- Small ribosomal subunit protein eS8
- Chain S
- Small ribosomal subunit protein eS6
- Chain T
- Small ribosomal subunit protein eS24
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