J5_9BS0_004

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

9BS0|1|A|G|1787, 9BS0|1|A|G|1792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9BS0_004 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.1674

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9BS0|1|A|G|1719
9BS0|1|A|C|1720
9BS0|1|A|A|1721
9BS0|1|A|A|1722
9BS0|1|A|A|1723
9BS0|1|A|A|1724
9BS0|1|A|U|1725
9BS0|1|A|G|1726
9BS0|1|A|A|1727
*
9BS0|1|A|U|1751
9BS0|1|A|G|1752
*
9BS0|1|A|C|1780
9BS0|1|A|C|1781
*
9BS0|1|A|G|1785
9BS0|1|A|U|1786
9BS0|1|A|G|1787
9BS0|1|A|A|1788
9BS0|1|A|A|1789
9BS0|1|A|U|1790
9BS0|1|A|A|1791
9BS0|1|A|G|1792
9BS0|1|A|G|1793
*
9BS0|1|A|C|2017
9BS0|1|A|A|2018
9BS0|1|A|C|2019

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL14

Chain K

Large ribosomal subunit protein bL19