J5_9BSS_001

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

9BSS|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9BSS_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1209

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9BSS|1|A|C|47
9BSS|1|A|G|48
9BSS|1|A|A|49
9BSS|1|A|U|50
9BSS|1|A|G|51
9BSS|1|A|A|52
9BSS|1|A|A|53
9BSS|1|A|G|54
*
9BSS|1|A|C|115
9BSS|1|A|G|116
9BSS|1|A|A|117
9BSS|1|A|A|118
9BSS|1|A|U|119
9BSS|1|A|G|120
*
9BSS|1|A|C|129
9BSS|1|A|A|130
*
9BSS|1|A|U|149
9BSS|1|A|A|150
9BSS|1|A|U|151
*
9BSS|1|A|A|178
9BSS|1|A|A|179
9BSS|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein bL34