J5_9BSS_003
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 9BSS|1|A|A|578, 9BSS|1|A|U|606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BSS_003 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.2934
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BSS|1|A|U|577
9BSS|1|A|A|578
9BSS|1|A|G|579
*
9BSS|1|A|C|604
9BSS|1|A|G|605
9BSS|1|A|U|606
9BSS|1|A|G|607
9BSS|1|A|C|608
*
9BSS|1|A|G|621
9BSS|1|A|A|622
9BSS|1|A|A|623
*
9BSS|1|A|U|1301
9BSS|1|A|A|1302
*
9BSS|1|A|U|2046
9BSS|1|A|A|2047
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein bL20
- Chain M
- Large ribosomal subunit protein bL21
- Chain N
- Large ribosomal subunit protein uL22
- Chain T
- Large ribosomal subunit protein bL32
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