J5_9BSS_005
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9BSS|1|A|G|1787, 9BSS|1|A|G|1792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BSS_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1264
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9BSS|1|A|G|1719
9BSS|1|A|C|1720
9BSS|1|A|A|1721
9BSS|1|A|A|1722
9BSS|1|A|A|1723
9BSS|1|A|A|1724
9BSS|1|A|U|1725
9BSS|1|A|G|1726
9BSS|1|A|A|1727
*
9BSS|1|A|U|1751
9BSS|1|A|G|1752
*
9BSS|1|A|C|1780
9BSS|1|A|C|1781
*
9BSS|1|A|G|1785
9BSS|1|A|U|1786
9BSS|1|A|G|1787
9BSS|1|A|A|1788
9BSS|1|A|A|1789
9BSS|1|A|U|1790
9BSS|1|A|A|1791
9BSS|1|A|G|1792
9BSS|1|A|G|1793
*
9BSS|1|A|C|2017
9BSS|1|A|A|2018
9BSS|1|A|C|2019
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain H
- Large ribosomal subunit protein uL14
- Chain K
- Large ribosomal subunit protein bL19
- Chain V
- Ribosome biogenesis GTPase A
Coloring options: