J5_9BUP_002
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUA*UC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BUP_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0672
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9BUP|1|AA|G|736
9BUP|1|AA|G|737
9BUP|1|AA|A|738
9BUP|1|AA|G|739
9BUP|1|AA|U|740
9BUP|1|AA|C|741
*
9BUP|1|AA|G|918
9BUP|1|AA|G|919
9BUP|1|AA|A|920
9BUP|1|AA|C|921
*
9BUP|1|AA|G|1060
9BUP|1|AA|U|1061
9BUP|1|AA|U|1062
9BUP|1|AA|A|1063
*
9BUP|1|AA|U|1524
9BUP|1|AA|C|1525
*
9BUP|1|AA|G|1580
9BUP|1|AA|C|1581
9BUP|1|AA|A|1582
9BUP|1|AA|G|1583
9BUP|1|AA|A|1584
9BUP|1|AA|U|1585
9BUP|1|AA|C|1586
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L28
- Chain A8
- 60S ribosomal protein L32
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein L4
- Chain AL
- 60S ribosomal protein L13
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
Coloring options: