J5_9BUP_003
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9BUP|1|AA|G|2409, 9BUP|1|AA|G|2414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BUP_003 not in the Motif Atlas
- Homologous match to J5_8CRE_004
- Geometric discrepancy: 0.1444
- The information below is about J5_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BUP|1|AA|G|2174
9BUP|1|AA|C|2175
9BUP|1|AA|A|2176
9BUP|1|AA|A|2177
9BUP|1|AA|A|2178
9BUP|1|AA|A|2179
9BUP|1|AA|U|2180
9BUP|1|AA|A|2181
9BUP|1|AA|G|2182
*
9BUP|1|AA|U|2206
9BUP|1|AA|G|2207
*
9BUP|1|AA|U|2402
9BUP|1|AA|G|2403
*
9BUP|1|AA|C|2407
9BUP|1|AA|G|2408
9BUP|1|AA|G|2409
9BUP|1|AA|A|2410
9BUP|1|AA|C|2411
9BUP|1|AA|A|2412
9BUP|1|AA|A|2413
9BUP|1|AA|G|2414
9BUP|1|AA|G|2415
*
9BUP|1|AA|C|2624
9BUP|1|AA|A|2625
9BUP|1|AA|C|2626
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A0
- 60S ribosomal protein L24
- Chain AE
- 60S ribosomal protein L3
- Chain AM
- 60S ribosomal protein L23
- Chain AT
- 60S ribosomal protein L19
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
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