J5_9BUP_004
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9BUP|1|AA|A|2697, 9BUP|1|AA|A|3176, 9BUP|1|AA|G|3233, 9BUP|1|AA|U|3337, 9BUP|1|AA|U|3338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|AA|A|2692
9BUP|1|AA|G|2693
9BUP|1|AA|A|2694
9BUP|1|AA|A|2695
9BUP|1|AA|G|2696
9BUP|1|AA|A|2697
9BUP|1|AA|C|2698
9BUP|1|AA|C|2699
*
9BUP|1|AA|G|3174
9BUP|1|AA|G|3175
9BUP|1|AA|A|3176
9BUP|1|AA|U|3177
9BUP|1|AA|A|3178
9BUP|1|AA|A|3179
9BUP|1|AA|C|3180
9BUP|1|AA|U|3181
9BUP|1|AA|G|3182
*
9BUP|1|AA|C|3226
9BUP|1|AA|U|3227
9BUP|1|AA|U|3228
9BUP|1|AA|C|3229
9BUP|1|AA|G|3230
9BUP|1|AA|A|3231
9BUP|1|AA|U|3232
9BUP|1|AA|G|3233
9BUP|1|AA|U|3234
9BUP|1|AA|C|3235
*
9BUP|1|AA|G|3310
9BUP|1|AA|G|3311
9BUP|1|AA|U|3312
9BUP|1|AA|U|3313
9BUP|1|AA|U|3314
9BUP|1|AA|A|3315
9BUP|1|AA|G|3316
*
9BUP|1|AA|U|3334
9BUP|1|AA|A|3335
9BUP|1|AA|G|3336
9BUP|1|AA|U|3337
9BUP|1|AA|U|3338
9BUP|1|AA|U|3339
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein L29
- Chain AD
- 60S ribosomal protein L2
- Chain AE
- 60S ribosomal protein L3
- Chain AF
- 60S ribosomal protein L4
- Chain S8
- Transfer RNA; tRNA
- Chain S9
- Transfer RNA; tRNA
- Chain Sa
- nascent polypeptide chain
Coloring options: