J5_9BUP_005
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CA*UG*CUGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9BUP|1|AA|U|2711, 9BUP|1|AA|U|3158, 9BUP|1|AA|G|3159, 9BUP|1|AA|A|3160, 9BUP|1|AA|A|3161
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BUP_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2442
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BUP|1|AA|U|2709
9BUP|1|AA|U|2710
9BUP|1|AA|U|2711
9BUP|1|AA|A|2712
*
9BUP|1|AA|U|2950
9BUP|1|AA|U|2951
9BUP|1|AA|U|2952
9BUP|1|AA|G|2953
*
9BUP|1|AA|C|2966
9BUP|1|AA|A|2967
*
9BUP|1|AA|U|2989
9BUP|1|AA|G|2990
*
9BUP|1|AA|C|3157
9BUP|1|AA|U|3158
9BUP|1|AA|G|3159
9BUP|1|AA|A|3160
9BUP|1|AA|A|3161
9BUP|1|AA|A|3162
9BUP|1|AA|A|3163
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein L29
- Chain AD
- 60S ribosomal protein L2
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
- Chain AS
- 60S ribosomal protein L18-2
- Chain AV
- 60S ribosomal protein L21
- Chain Ai
- Large ribosomal subunit protein eL42
- Chain S7
- Transfer RNA; tRNA
Coloring options: