3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUUGU*AAAUAAC*GGAAUGGU*AGAGUAACAAU*AUAG
Length
35 nucleotides
Bulged bases
9BUP|1|SA|U|547
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9BUP|1|SA|C|31
9BUP|1|SA|U|32
9BUP|1|SA|U|33
9BUP|1|SA|G|34
9BUP|1|SA|U|35
*
9BUP|1|SA|A|479
9BUP|1|SA|A|480
9BUP|1|SA|A|481
9BUP|1|SA|U|482
9BUP|1|SA|A|483
9BUP|1|SA|A|484
9BUP|1|SA|C|485
*
9BUP|1|SA|G|516
9BUP|1|SA|G|517
9BUP|1|SA|A|518
9BUP|1|SA|A|519
9BUP|1|SA|U|520
9BUP|1|SA|G|521
9BUP|1|SA|G|522
9BUP|1|SA|U|523
*
9BUP|1|SA|A|543
9BUP|1|SA|G|544
9BUP|1|SA|A|545
9BUP|1|SA|G|546
9BUP|1|SA|U|547
9BUP|1|SA|A|548
9BUP|1|SA|A|549
9BUP|1|SA|C|550
9BUP|1|SA|A|551
9BUP|1|SA|A|552
9BUP|1|SA|U|553
*
9BUP|1|SA|A|599
9BUP|1|SA|U|600
9BUP|1|SA|A|601
9BUP|1|SA|G|602

Current chains

Chain SA
18S ribosomal RNA

Nearby chains

Chain S6
40S ribosomal protein S30
Chain SE
40S ribosomal protein S9
Chain SQ
40S ribosomal protein S23

Coloring options:

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