J5_9BUP_009
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUUCA*UUAA*UG*CAAAAUU*GAU
- Length
- 22 nucleotides
- Bulged bases
- 9BUP|1|SA|U|753, 9BUP|1|SA|U|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|SA|A|643
9BUP|1|SA|U|644
9BUP|1|SA|U|645
9BUP|1|SA|U|646
9BUP|1|SA|C|647
9BUP|1|SA|A|648
*
9BUP|1|SA|U|752
9BUP|1|SA|U|753
9BUP|1|SA|A|754
9BUP|1|SA|A|755
*
9BUP|1|SA|U|792
9BUP|1|SA|G|793
*
9BUP|1|SA|C|871
9BUP|1|SA|A|872
9BUP|1|SA|A|873
9BUP|1|SA|A|874
9BUP|1|SA|A|875
9BUP|1|SA|U|876
9BUP|1|SA|U|877
*
9BUP|1|SA|G|926
9BUP|1|SA|A|927
9BUP|1|SA|U|928
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AT
- 60S ribosomal protein L19
- Chain SJ
- 40S ribosomal protein S7
- Chain SK
- 40S ribosomal protein S15A
- Chain SU
- 40S ribosomal protein S15
- Chain SV
- 40S ribosomal protein S11
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