J5_9C3H_005
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9C3H|1|L5|G|3922, 9C3H|1|L5|A|4376, 9C3H|1|L5|G|4377, 9C3H|1|L5|A|4378, 9C3H|1|L5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9C3H_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2977
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9C3H|1|L5|PSU|3920
9C3H|1|L5|U|3921
9C3H|1|L5|G|3922
9C3H|1|L5|A|3923
*
9C3H|1|L5|U|4188
9C3H|1|L5|U|4189
9C3H|1|L5|U|4190
9C3H|1|L5|G|4191
*
9C3H|1|L5|C|4204
9C3H|1|L5|A|4205
*
9C3H|1|L5|OMU|4227
9C3H|1|L5|OMG|4228
*
9C3H|1|L5|C|4375
9C3H|1|L5|A|4376
9C3H|1|L5|G|4377
9C3H|1|L5|A|4378
9C3H|1|L5|A|4379
9C3H|1|L5|A|4380
9C3H|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LT
- Large ribosomal subunit protein eL21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Le
- Large ribosomal subunit protein eL42
- Chain Lj
- Large ribosomal subunit protein eL18
- Chain SB
- CCR4-NOT transcription complex subunit 3
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