J5_9CL9_002

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CGAAAGCUAUUUAGGUAGCGCCU*GGAGACACACGGCG*CGUCGUGAAGAGGGAAACAACCCAGACC*GGCAG*UGGGUAGG

Length

78 nucleotides

Bulged bases

9CL9|1|CA|A|821, 9CL9|1|CA|G|822, 9CL9|1|CA|U|827, 9CL9|1|CA|U|828, 9CL9|1|CA|G|830, 9CL9|1|CA|A|945, 9CL9|1|CA|U|970, 9CL9|1|CA|A|972, 9CL9|1|CA|C|982, 9CL9|1|CA|A|983, 9CL9|1|CA|C|985, 9CL9|1|CA|G|989, 9CL9|1|CA|C|1164, 9CL9|1|CA|A|1165, 9CL9|1|CA|G|1185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|C|817
9CL9|1|CA|G|818
9CL9|1|CA|A|819
9CL9|1|CA|A|820
9CL9|1|CA|A|821
9CL9|1|CA|G|822
9CL9|1|CA|C|823
9CL9|1|CA|U|824
9CL9|1|CA|A|825
9CL9|1|CA|U|826
9CL9|1|CA|U|827
9CL9|1|CA|U|828
9CL9|1|CA|A|829
9CL9|1|CA|G|830
9CL9|1|CA|G|831
9CL9|1|CA|U|832
9CL9|1|CA|A|833
9CL9|1|CA|G|834
9CL9|1|CA|C|835
9CL9|1|CA|G|836
9CL9|1|CA|C|837
9CL9|1|CA|C|838
9CL9|1|CA|U|839
*
9CL9|1|CA|G|939
9CL9|1|CA|G|940
9CL9|1|CA|A|941
9CL9|1|CA|G|942
9CL9|1|CA|A|943
9CL9|1|CA|C|944
9CL9|1|CA|A|945
9CL9|1|CA|C|946
9CL9|1|CA|A|947
9CL9|1|CA|C|948
9CL9|1|CA|G|949
9CL9|1|CA|G|950
9CL9|1|CA|C|951
9CL9|1|CA|G|952
*
9CL9|1|CA|C|965
9CL9|1|CA|G|966
9CL9|1|CA|U|967
9CL9|1|CA|C|968
9CL9|1|CA|G|969
9CL9|1|CA|U|970
9CL9|1|CA|G|971
9CL9|1|CA|A|972
9CL9|1|CA|A|973
9CL9|1|CA|G|974
9CL9|1|CA|A|975
9CL9|1|CA|G|976
9CL9|1|CA|G|977
9CL9|1|CA|G|978
9CL9|1|CA|A|979
9CL9|1|CA|A|980
9CL9|1|CA|A|981
9CL9|1|CA|C|982
9CL9|1|CA|A|983
9CL9|1|CA|A|984
9CL9|1|CA|C|985
9CL9|1|CA|C|986
9CL9|1|CA|C|987
9CL9|1|CA|A|988
9CL9|1|CA|G|989
9CL9|1|CA|A|990
9CL9|1|CA|C|991
9CL9|1|CA|C|992
*
9CL9|1|CA|G|1162
9CL9|1|CA|G|1163
9CL9|1|CA|C|1164
9CL9|1|CA|A|1165
9CL9|1|CA|G|1166
*
9CL9|1|CA|U|1184
9CL9|1|CA|G|1185
9CL9|1|CA|G|1186
9CL9|1|CA|G|1187
9CL9|1|CA|U|1188
9CL9|1|CA|A|1189
9CL9|1|CA|G|1190
9CL9|1|CA|G|1191

Current chains

Chain CA

23S rRNA

Nearby chains

Chain A

Ribosomal large subunit pseudouridine synthase B

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21