J5_9CPA_002

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

9CPA|1|2|A|580

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|30
9CPA|1|2|U|31
9CPA|1|2|U|32
9CPA|1|2|G|33
9CPA|1|2|U|34
*
9CPA|1|2|A|511
9CPA|1|2|A|512
9CPA|1|2|A|513
9CPA|1|2|U|514
9CPA|1|2|A|515
9CPA|1|2|A|516
9CPA|1|2|C|517
*
9CPA|1|2|G|548
9CPA|1|2|G|549
9CPA|1|2|A|550
9CPA|1|2|A|551
9CPA|1|2|U|552
9CPA|1|2|G|553
9CPA|1|2|A|554
9CPA|1|2|G|555
*
9CPA|1|2|C|575
9CPA|1|2|G|576
9CPA|1|2|A|577
9CPA|1|2|G|578
9CPA|1|2|G|579
9CPA|1|2|A|580
9CPA|1|2|U|581
9CPA|1|2|C|582
9CPA|1|2|C|583
9CPA|1|2|A|584
9CPA|1|2|U|585
*
9CPA|1|2|A|631
9CPA|1|2|U|632
9CPA|1|2|A|633
9CPA|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain Z

uS12

Chain h

ATP-dependent RNA helicase DHX29

Chain i

40S ribosomal protein S30

Chain p

eukaryotic translation initiation factor 3 subunit b