J5_9CPA_003

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9CPA|1|2|U|55, 9CPA|1|2|A|92, 9CPA|1|2|C|462

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|53
9CPA|1|2|A|54
9CPA|1|2|U|55
9CPA|1|2|G|56
*
9CPA|1|2|C|89
9CPA|1|2|G|90
9CPA|1|2|A|91
9CPA|1|2|A|92
9CPA|1|2|U|93
9CPA|1|2|G|94
9CPA|1|2|G|95
9CPA|1|2|C|96
*
9CPA|1|2|G|424
9CPA|1|2|A|425
9CPA|1|2|G|426
*
9CPA|1|2|C|447
9CPA|1|2|A|448
9CPA|1|2|C|449
*
9CPA|1|2|G|460
9CPA|1|2|G|461
9CPA|1|2|C|462
9CPA|1|2|A|463
9CPA|1|2|G|464

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain K

Small ribosomal subunit protein eS8

Chain a

40S ribosomal protein S24