J5_9CPA_004

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCUACUU*AUGCCGACGGC*GUG*CCG*CGACC

Length

44 nucleotides

Bulged bases

9CPA|1|2|C|131, 9CPA|1|2|U|132, 9CPA|1|2|U|135, 9CPA|1|2|U|137, 9CPA|1|2|C|138, 9CPA|1|2|C|139, 9CPA|1|2|C|142, 9CPA|1|2|U|143, 9CPA|1|2|G|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|G|123
9CPA|1|2|U|124
9CPA|1|2|C|125
9CPA|1|2|G|126
9CPA|1|2|C|127
9CPA|1|2|U|128
9CPA|1|2|C|129
9CPA|1|2|G|130
9CPA|1|2|C|131
9CPA|1|2|U|132
9CPA|1|2|C|133
9CPA|1|2|C|134
9CPA|1|2|U|135
9CPA|1|2|C|136
9CPA|1|2|U|137
9CPA|1|2|C|138
9CPA|1|2|C|139
9CPA|1|2|U|140
9CPA|1|2|A|141
9CPA|1|2|C|142
9CPA|1|2|U|143
9CPA|1|2|U|144
*
9CPA|1|2|A|175
9CPA|1|2|U|176
9CPA|1|2|G|177
9CPA|1|2|C|178
9CPA|1|2|C|179
9CPA|1|2|G|180
9CPA|1|2|A|181
9CPA|1|2|C|182
9CPA|1|2|G|183
9CPA|1|2|G|184
9CPA|1|2|C|185
*
9CPA|1|2|G|210
9CPA|1|2|U|211
9CPA|1|2|G|212
*
9CPA|1|2|C|301
9CPA|1|2|C|302
9CPA|1|2|G|303
*
9CPA|1|2|C|327
9CPA|1|2|G|328
9CPA|1|2|A|329
9CPA|1|2|C|330
9CPA|1|2|C|331

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain K

Small ribosomal subunit protein eS8