Loop J5_9CPA

3D structure

PDB id: 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å

Loop

Sequence: GUCGCUCGCUCCUCUCCUACUU*AUGCCGACGGC*GUG*CCGAU*ACGACC
Length: 47 nucleotides
Bulged bases: 9CPA|1|2|C|131, 9CPA|1|2|U|132, 9CPA|1|2|U|135, 9CPA|1|2|U|137, 9CPA|1|2|C|138, 9CPA|1|2|C|139, 9CPA|1|2|C|142, 9CPA|1|2|U|143, 9CPA|1|2|G|183
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9CPA|1|2|G|123
9CPA|1|2|U|124
9CPA|1|2|C|125
9CPA|1|2|G|126
9CPA|1|2|C|127
9CPA|1|2|U|128
9CPA|1|2|C|129
9CPA|1|2|G|130
9CPA|1|2|C|131
9CPA|1|2|U|132
9CPA|1|2|C|133
9CPA|1|2|C|134
9CPA|1|2|U|135
9CPA|1|2|C|136
9CPA|1|2|U|137
9CPA|1|2|C|138
9CPA|1|2|C|139
9CPA|1|2|U|140
9CPA|1|2|A|141
9CPA|1|2|C|142
9CPA|1|2|U|143
9CPA|1|2|U|144
*
9CPA|1|2|A|175
9CPA|1|2|U|176
9CPA|1|2|G|177
9CPA|1|2|C|178
9CPA|1|2|C|179
9CPA|1|2|G|180
9CPA|1|2|A|181
9CPA|1|2|C|182
9CPA|1|2|G|183
9CPA|1|2|G|184
9CPA|1|2|C|185
*
9CPA|1|2|G|210
9CPA|1|2|U|211
9CPA|1|2|G|212
*
9CPA|1|2|C|301
9CPA|1|2|C|302
9CPA|1|2|G|303
9CPA|1|2|A|304
9CPA|1|2|U|305
*
9CPA|1|2|A|326
9CPA|1|2|C|327
9CPA|1|2|G|328
9CPA|1|2|A|329
9CPA|1|2|C|330
9CPA|1|2|C|331

Current chains

Chain 2: 18S ribosomal RNA

Nearby chains

Chain G: 40S ribosomal protein S4
Chain I: 40S ribosomal protein S6
Chain K: Small ribosomal subunit protein eS8

J5_9CPA_005