J5_9D89_005
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9D89|1|D|A|2066, 9D89|1|D|A|2452, 9D89|1|D|H2U|2453, 9D89|1|D|U|2589, 9D89|1|D|U|2613
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9D89|1|D|G|2061
9D89|1|D|A|2062
9D89|1|D|A|2063
9D89|1|D|A|2064
9D89|1|D|G|2065
9D89|1|D|A|2066
9D89|1|D|C|2067
9D89|1|D|C|2068
*
9D89|1|D|G|2450
9D89|1|D|G|2451
9D89|1|D|A|2452
9D89|1|D|H2U|2453
9D89|1|D|A|2454
9D89|1|D|A|2455
9D89|1|D|C|2456
9D89|1|D|A|2457
*
9D89|1|D|U|2504
9D89|1|D|C|2505
9D89|1|D|G|2506
9D89|1|D|2MA|2507
9D89|1|D|PSU|2508
9D89|1|D|G|2509
9D89|1|D|U|2510
9D89|1|D|C|2511
*
9D89|1|D|G|2586
9D89|1|D|G|2587
9D89|1|D|U|2588
9D89|1|D|U|2589
9D89|1|D|U|2590
9D89|1|D|A|2591
9D89|1|D|G|2592
*
9D89|1|D|C|2610
9D89|1|D|G|2611
9D89|1|D|G|2612
9D89|1|D|U|2613
9D89|1|D|C|2614
9D89|1|D|C|2615
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
- Chain G
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L32
- Chain T
- Rumicidin-2 (12-27)
- Chain l
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L22
Coloring options: