3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
9DFC|1|1a|A|109, 9DFC|1|1a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9DFC_009 not in the Motif Atlas
Homologous match to J5_6CZR_021
Geometric discrepancy: 0.0805
The information below is about J5_6CZR_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

9DFC|1|1a|C|58
9DFC|1|1a|A|59
9DFC|1|1a|A|60
9DFC|1|1a|G|61
*
9DFC|1|1a|C|106
9DFC|1|1a|G|107
9DFC|1|1a|G|108
9DFC|1|1a|A|109
9DFC|1|1a|C|110
9DFC|1|1a|G|111
9DFC|1|1a|G|112
9DFC|1|1a|G|113
*
9DFC|1|1a|C|314
9DFC|1|1a|A|315
9DFC|1|1a|G|316
*
9DFC|1|1a|C|337
9DFC|1|1a|A|338
9DFC|1|1a|C|339
*
9DFC|1|1a|G|350
9DFC|1|1a|G|351
9DFC|1|1a|C|352
9DFC|1|1a|A|353
9DFC|1|1a|G|354

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1O
50S ribosomal protein L14
Chain 1T
50S ribosomal protein L19
Chain 1p
30S ribosomal protein S16
Chain 1t
30S ribosomal protein S20

Coloring options:


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